PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g027770.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 278aa    MW: 31407 Da    PI: 4.3185
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g027770.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.94.4e-1913101197
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkv++++   +s  + +p +f+e+   +   + t +l+ + g+ W+v +  +k +++ ++t+GW++F+++++L +g+f++F +dg+++f   v+
  Csa06g027770.1  13 FFKVFLSETGIES--FAIPLSFMEHLADP--LPNTAKLQGTGGKDWTVSM--TKIRDGAYFTDGWSKFARDHELVDGEFLTFVYDGNRTF--EVS 99 
                     8898955555555..7*******666655..889****************..*********************************98888..777 PP

                     EE CS
              B3  96 vf 97 
                     vf
  Csa06g027770.1 100 VF 101
                     76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.18311104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-2211103IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-2211105IPR015300DNA-binding pseudobarrel domain
CDDcd100173.54E-1911101No hitNo description
PfamPF023622.3E-1613101IPR003340B3 DNA binding domain
SMARTSM010198.9E-2013104IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-9177269IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-6178269IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.32182272IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MAEYEDDVLL PRFFKVFLSE TGIESFAIPL SFMEHLADPL PNTAKLQGTG GKDWTVSMTK  60
IRDGAYFTDG WSKFARDHEL VDGEFLTFVY DGNRTFEVSV FGRLGCKETR AEAETIELSG  120
SSSDSEEDEE EPSMDLDYDI SLGEDEEISQ SLYPLEGEET ESDAAAVFEG NVDIAELTNP  180
HFPTTLKNRI YELLIPANIV KENSLEFGES VKYIDEEGTL VGLRGKWADN RVCFKGWDRI  240
CRRNKLKKHQ DTVECELLHD RNKMVHSIRV HVIRGTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A2e-191210610104At1g16640
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010515820.10.0PREDICTED: B3 domain-containing protein REM20-like
SwissprotQ8LAV51e-130REM20_ARATH; B3 domain-containing protein REM20
TrEMBLR0HPM71e-163R0HPM7_9BRAS; Uncharacterized protein
STRINGscaffold_502422.11e-142(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.11e-124B3 family protein